Package org.apache.sysds.runtime.compress.colgroup

Class ColGroupUncompressedArray

java.lang.Object
org.apache.sysds.runtime.compress.colgroup.AColGroup
org.apache.sysds.runtime.compress.colgroup.ColGroupUncompressedArray
All Implemented Interfaces:
Serializable
public class ColGroupUncompressedArray extends AColGroup
Special sideways compressed column group not supposed to be used outside of the compressed transform encode.
See Also:

  • Field Details

    • array

      public final Array<?> array

    • id

      public final int id

  • Constructor Details

    • ColGroupUncompressedArray

      public ColGroupUncompressedArray(Array<?> data, int id, IColIndex colIndexes)

  • Method Details

    • getNumValues

      public int getNumValues()
      Description copied from class: AColGroup
      Obtain number of distinct tuples in contained sets of values associated with this column group. If the column group is uncompressed the number or rows is returned.
      Specified by:
      getNumValues in class AColGroup
      Returns:
      the number of distinct sets of values associated with the bitmaps in this column group

    • estimateInMemorySize

      public long estimateInMemorySize()
      Description copied from class: AColGroup
      Get the upper bound estimate of in memory allocation for the column group.
      Overrides:
      estimateInMemorySize in class AColGroup
      Returns:
      an upper bound on the number of bytes used to store this ColGroup in memory.

    • toString

      public String toString()
      Overrides:
      toString in class AColGroup

    • copyAndSet

      public AColGroup copyAndSet(IColIndex colIndexes)
      Description copied from class: AColGroup
      Copy the content of the column group with pointers to the previous content but with new column given Note this method does not verify if the colIndexes specified are valid and correct dimensions for the underlying column groups.
      Specified by:
      copyAndSet in class AColGroup
      Parameters:
      colIndexes - the new indexes to use in the copy
      Returns:
      a new object with pointers to underlying data.

    • decompressToDenseBlockTransposed

      public void decompressToDenseBlockTransposed(DenseBlock db, int rl, int ru)
      Description copied from class: AColGroup
      Decompress a range of rows into a dense transposed block.
      Specified by:
      decompressToDenseBlockTransposed in class AColGroup
      Parameters:
      db - Dense target block
      rl - Row in this column group to start at.
      ru - Row in this column group to end at.

    • decompressToSparseBlockTransposed

      public void decompressToSparseBlockTransposed(SparseBlockMCSR sb, int nColOut)
      Description copied from class: AColGroup
      Decompress the column group to the sparse transposed block. Note that the column groups would only need to decompress into specific sub rows of the Sparse block
      Specified by:
      decompressToSparseBlockTransposed in class AColGroup
      Parameters:
      sb - Sparse target block
      nColOut - The number of columns in the sb.

    • getIdx

      public double getIdx(int r, int colIdx)
      Description copied from class: AColGroup
      Get the value at a colGroup specific row/column index position.
      Specified by:
      getIdx in class AColGroup
      Parameters:
      r - row
      colIdx - column index in the _colIndexes.
      Returns:
      value at the row/column index position

    • getCompType

      public AColGroup.CompressionType getCompType()
      Description copied from class: AColGroup
      Obtain the compression type.
      Specified by:
      getCompType in class AColGroup
      Returns:
      How the elements of the column group are compressed.

    • decompressToDenseBlock

      public void decompressToDenseBlock(DenseBlock db, int rl, int ru, int offR, int offC)
      Description copied from class: AColGroup
      Decompress into the DenseBlock. (no NNZ handling)
      Specified by:
      decompressToDenseBlock in class AColGroup
      Parameters:
      db - Target DenseBlock
      rl - Row to start decompression from
      ru - Row to end decompression at (not inclusive)
      offR - Row offset into the target to decompress
      offC - Column offset into the target to decompress

    • decompressToSparseBlock

      public void decompressToSparseBlock(SparseBlock sb, int rl, int ru, int offR, int offC)
      Description copied from class: AColGroup
      Decompress into the SparseBlock. (no NNZ handling) Note this method is allowing to calls to append since it is assumed that the sparse column indexes are sorted afterwards
      Specified by:
      decompressToSparseBlock in class AColGroup
      Parameters:
      sb - Target SparseBlock
      rl - Row to start decompression from
      ru - Row to end decompression at (not inclusive)
      offR - Row offset into the target to decompress
      offC - Column offset into the target to decompress

    • rightMultByMatrix

      public AColGroup rightMultByMatrix(MatrixBlock right, IColIndex allCols, int k)
      Description copied from class: AColGroup
      Right matrix multiplication with this column group. This method can return null, meaning that the output overlapping group would have been empty.
      Specified by:
      rightMultByMatrix in class AColGroup
      Parameters:
      right - The MatrixBlock on the right of this matrix multiplication
      allCols - A pre-materialized list of all col indexes, that can be shared across all column groups if use full, can be set to null.
      k - The parallelization degree allowed internally in this operation.
      Returns:
      The new Column Group or null that is the result of the matrix multiplication.

    • tsmm

      public void tsmm(MatrixBlock ret, int nRows)
      Description copied from class: AColGroup
      Do a transposed self matrix multiplication on the left side t(x) %*% x. but only with this column group. This gives better performance since there is no need to iterate through all the rows of the matrix, but the execution can be limited to its number of distinct values. Note it only calculate the upper triangle
      Specified by:
      tsmm in class AColGroup
      Parameters:
      ret - The return matrix block [numColumns x numColumns]
      nRows - The number of rows in the column group

    • leftMultByMatrixNoPreAgg

      public void leftMultByMatrixNoPreAgg(MatrixBlock matrix, MatrixBlock result, int rl, int ru, int cl, int cu)
      Description copied from class: AColGroup
      Left multiply with this column group.
      Specified by:
      leftMultByMatrixNoPreAgg in class AColGroup
      Parameters:
      matrix - The matrix to multiply with on the left
      result - The result to output the values into, always dense for the purpose of the column groups parallelizing
      rl - The row to begin the multiplication from on the lhs matrix
      ru - The row to end the multiplication at on the lhs matrix
      cl - The column to begin the multiplication from on the lhs matrix
      cu - The column to end the multiplication at on the lhs matrix

    • leftMultByAColGroup

      public void leftMultByAColGroup(AColGroup lhs, MatrixBlock result, int nRows)
      Description copied from class: AColGroup
      Left side matrix multiplication with a column group that is transposed.
      Specified by:
      leftMultByAColGroup in class AColGroup
      Parameters:
      lhs - The left hand side Column group to multiply with, the left hand side should be considered transposed. Also it should be guaranteed that this column group is not empty.
      result - The result matrix to insert the result of the multiplication into
      nRows - Number of rows in the lhs colGroup

    • tsmmAColGroup

      public void tsmmAColGroup(AColGroup other, MatrixBlock result)
      Description copied from class: AColGroup
      Matrix multiply with this other column group, but: 1. Only output upper triangle values. 2. Multiply both ways with "this" being on the left and on the right. It should be guaranteed that the input is not the same as the caller of the method. The second step is achievable by treating the initial multiplied matrix, and adding its values to the correct locations in the output.
      Specified by:
      tsmmAColGroup in class AColGroup
      Parameters:
      other - The other Column group to multiply with
      result - The result matrix to put the results into

    • scalarOperation

      public AColGroup scalarOperation(ScalarOperator op)
      Description copied from class: AColGroup
      Perform the specified scalar operation directly on the compressed column group, without decompressing individual cells if possible.
      Specified by:
      scalarOperation in class AColGroup
      Parameters:
      op - operation to perform
      Returns:
      version of this column group with the operation applied

    • binaryRowOpLeft

      public AColGroup binaryRowOpLeft(BinaryOperator op, double[] v, boolean isRowSafe)
      Description copied from class: AColGroup
      Perform a binary row operation.
      Specified by:
      binaryRowOpLeft in class AColGroup
      Parameters:
      op - The operation to execute
      v - The vector of values to apply the values contained should be at least the length of the highest value in the column index
      isRowSafe - True if the binary op is applied to an entire zero row and all results are zero
      Returns:
      A updated column group with the new values.

    • binaryRowOpRight

      public AColGroup binaryRowOpRight(BinaryOperator op, double[] v, boolean isRowSafe)
      Description copied from class: AColGroup
      Perform a binary row operation.
      Specified by:
      binaryRowOpRight in class AColGroup
      Parameters:
      op - The operation to execute
      v - The vector of values to apply the values contained should be at least the length of the highest value in the column index
      isRowSafe - True if the binary op is applied to an entire zero row and all results are zero
      Returns:
      A updated column group with the new values.

    • unaryAggregateOperations

      public void unaryAggregateOperations(AggregateUnaryOperator op, double[] c, int nRows, int rl, int ru)
      Description copied from class: AColGroup
      Unary Aggregate operator, since aggregate operators require new object output, the output becomes an uncompressed matrix. The range of rl to ru only applies to row aggregates. (ReduceCol)
      Specified by:
      unaryAggregateOperations in class AColGroup
      Parameters:
      op - The operator used
      c - The output matrix block
      nRows - The total number of rows in the Column Group
      rl - The starting row to do aggregation from
      ru - The last row to do aggregation to (not included)

    • sliceRows

      public AColGroup sliceRows(int rl, int ru)
      Description copied from class: AColGroup
      Slice range of rows out of the column group and return a new column group only containing the row segment. Note that this slice should maintain pointers back to the original dictionaries and only modify index structures.
      Specified by:
      sliceRows in class AColGroup
      Parameters:
      rl - The row to start at
      ru - The row to end at (not included)
      Returns:
      A new column group containing the specified row range.

    • getMin

      public double getMin()
      Description copied from class: AColGroup
      Short hand method for getting minimum value contained in this column group.
      Specified by:
      getMin in class AColGroup
      Returns:
      The minimum value contained in this ColumnGroup

    • getMax

      public double getMax()
      Description copied from class: AColGroup
      Short hand method for getting maximum value contained in this column group.
      Specified by:
      getMax in class AColGroup
      Returns:
      The maximum value contained in this ColumnGroup

    • getSum

      public double getSum(int nRows)
      Description copied from class: AColGroup
      Short hand method for getting the sum of this column group
      Specified by:
      getSum in class AColGroup
      Parameters:
      nRows - The number of rows in the column group
      Returns:
      The sum of this column group

    • containsValue

      public boolean containsValue(double pattern)
      Description copied from class: AColGroup
      Detect if the column group contains a specific value.
      Specified by:
      containsValue in class AColGroup
      Parameters:
      pattern - The value to look for.
      Returns:
      boolean saying true if the value is contained.

    • getNumberNonZeros

      public long getNumberNonZeros(int nRows)
      Description copied from class: AColGroup
      Get the number of nonZeros contained in this column group.
      Specified by:
      getNumberNonZeros in class AColGroup
      Parameters:
      nRows - The number of rows in the column group, this is used for groups that does not contain information about how many rows they have.
      Returns:
      The nnz.

    • replace

      public AColGroup replace(double pattern, double replace)
      Description copied from class: AColGroup
      Make a copy of the column group values, and replace all values that match pattern with replacement value.
      Specified by:
      replace in class AColGroup
      Parameters:
      pattern - The value to look for
      replace - The value to replace the other value with
      Returns:
      A new Column Group, reusing the index structure but with new values.

    • computeColSums

      public void computeColSums(double[] c, int nRows)
      Description copied from class: AColGroup
      Compute the column sum
      Specified by:
      computeColSums in class AColGroup
      Parameters:
      c - The array to add the column sum to.
      nRows - The number of rows in the column group.

    • centralMoment

      public CmCovObject centralMoment(CMOperator op, int nRows)
      Description copied from class: AColGroup
      Central Moment instruction executed on a column group.
      Specified by:
      centralMoment in class AColGroup
      Parameters:
      op - The Operator to use.
      nRows - The number of rows contained in the ColumnGroup.
      Returns:
      A Central Moment object.

    • rexpandCols

      public AColGroup rexpandCols(int max, boolean ignore, boolean cast, int nRows)
      Description copied from class: AColGroup
      Expand the column group to multiple columns. (one hot encode the column group)
      Specified by:
      rexpandCols in class AColGroup
      Parameters:
      max - The number of columns to expand to and cutoff values at.
      ignore - If zero and negative values should be ignored.
      cast - If the double values contained should be cast to whole numbers.
      nRows - The number of rows in the column group.
      Returns:
      A new column group containing max number of columns.

    • getCost

      public double getCost(ComputationCostEstimator e, int nRows)
      Description copied from class: AColGroup
      Get the computation cost associated with this column group.
      Specified by:
      getCost in class AColGroup
      Parameters:
      e - The computation cost estimator
      nRows - the number of rows in the column group
      Returns:
      The cost of this column group

    • unaryOperation

      public AColGroup unaryOperation(UnaryOperator op)
      Description copied from class: AColGroup
      Perform unary operation on the column group and return a new column group
      Specified by:
      unaryOperation in class AColGroup
      Parameters:
      op - The operation to perform
      Returns:
      The new column group

    • isEmpty

      public boolean isEmpty()
      Description copied from class: AColGroup
      Get if the group is only containing zero
      Specified by:
      isEmpty in class AColGroup
      Returns:
      true if empty

    • append

      public AColGroup append(AColGroup g)
      Description copied from class: AColGroup
      Append the other column group to this column group. This method tries to combine them to return a new column group containing both. In some cases it is possible in reasonable time, in others it is not. The result is first this column group followed by the other column group in higher row values. If it is not possible or very inefficient null is returned.
      Specified by:
      append in class AColGroup
      Parameters:
      g - The other column group
      Returns:
      A combined column group or null

    • getCompressionScheme

      public ICLAScheme getCompressionScheme()
      Description copied from class: AColGroup
      Get the compression scheme for this column group to enable compression of other data.
      Specified by:
      getCompressionScheme in class AColGroup
      Returns:
      The compression scheme of this column group

    • recompress

      public AColGroup recompress()
      Description copied from class: AColGroup
      Recompress this column group into a new column group.
      Specified by:
      recompress in class AColGroup
      Returns:
      A new or the same column group depending on optimization goal.

    • getCompressionInfo

      public CompressedSizeInfoColGroup getCompressionInfo(int nRow)
      Description copied from class: AColGroup
      Get the compression info for this column group.
      Specified by:
      getCompressionInfo in class AColGroup
      Parameters:
      nRow - The number of rows in this column group.
      Returns:
      The compression info for this group.

    • reduceCols

      public AColGroup reduceCols()
      Description copied from class: AColGroup
      Perform row sum on the internal dictionaries, and return the same index structure. This method returns null on empty column groups. Note this method does not guarantee correct behavior if the given group is AMorphingGroup, instead it should be morphed to a valid columngroup via extractCommon first.
      Specified by:
      reduceCols in class AColGroup
      Returns:
      The reduced colgroup.

    • getSparsity

      public double getSparsity()
      Description copied from class: AColGroup
      Get an approximate sparsity of this column group
      Specified by:
      getSparsity in class AColGroup
      Returns:
      the approximate sparsity of this columngroup

    • splitReshape

      public AColGroup[] splitReshape(int multiplier, int nRow, int nColOrg)
      Description copied from class: AColGroup
      This method returns a list of column groups that are naive splits of this column group as if it is reshaped. This means the column groups rows are split into x number of other column groups where x is the multiplier. The indexes are assigned round robbin to each of the output groups, meaning the first index is assigned. If for instance the 4. column group is split by a 2 multiplier and there was 5 columns in total originally. The output becomes 2 column groups at column index 4 and one at 9. If possible the split column groups should reuse pointers back to the original dictionaries!
      Specified by:
      splitReshape in class AColGroup
      Parameters:
      multiplier - The number of column groups to split into
      nRow - The number of rows in this column group in case the underlying column group does not know
      nColOrg - The number of overall columns in the host CompressedMatrixBlock.
      Returns:
      a list of split column groups

    • removeEmptyRows

      public AColGroup removeEmptyRows(boolean[] selectV, int rOut)
      Description copied from class: AColGroup
      Return a new column group containing only the selected rows in the given boolean vector. Whenever possible only modify the index structure, not the dictionary of the column groups.
      Specified by:
      removeEmptyRows in class AColGroup
      Parameters:
      selectV - The selection vector
      rOut - The number of rows in the output
      Returns:
      The new column group

    • sort

      public AColGroup sort()
      Description copied from class: AColGroup
      Sort the values of the column group according to double comparison operations and return as another compressed group. This sorting assumes that the column group is sorted independently of everything else.
      Specified by:
      sort in class AColGroup
      Returns:
      The sorted group